Yeah it works :) thanks

No not really I'm trying to make my life easier using perl to handle a biological output. That would save me some time!!
Thanks for the help anyway:)

Yes...

It had finally succeed me to extract the importance information in a PDB file, but still have some problems with the calculations...

I will try to explain it in a more pedagogic manner

What I...

Yeah I have done some researche but without any luck...

An exampel will be:
look first were there are a CA atom
in a line in the PDB file. it can look like that :
ATOM 345 CA LYS A 24 ...

here is the pdb file I was talking about

Hey,

Iam working with PDB files, and have some problems with extracting and calculating...

a PDB file look like thise for those how dont know:
see attached file

What I want is to read the...

Hey Kevin,

I cant thank you enough for your time and help...
I had correct the syntax above but it still not given me
@character = (T T G A C A * T A T A AT T)
@penalty = (7 8 6 5 5 5 15-21 8...

No I have made much progress, but I am working on figuring something out!!!
The deadline is tomorrow so I am pretty frustrated how much I am able to hand in!

What I have done so far is :
...

hmm maybe you will understand it better with an example:

my data where I wanna find matches: TTATGTAGA

my deviation is set to 4

my text file who tell us what we wanna look for and what...

The penalty number beside the letter in my text file is the number of "punish" for a mismatch...
now the deviation is a number you choose to set on the command line, the deviation is depended on the...

But thanks anyways for your help and your time... ill see how far ill get with it...

thanx for the web ill chek it out..

yeah okay I see, a stupid question : is my comment then saved if I wanna used it later!!!

HMM for example the signaldescription file is given, the data file is given and a deviation nr...

signaldescription file:
#ONKLE PHIL
A 3
T 4
G 3
* 4-6 #charcters at pos 4 to...

hmm okay lat me explained it in another way...I have this data file containing some characters, what I want is to use my txt file (so called signaldescription (what I wanna match with)) to finde...

Okay I see, but thanks alot for you help I appriciet your time really....
The hash character # is indicating that this line is a comment, and should be ignored by the program. thats why I have my...

Okay but can you advice me how to work with pattern match, if i want to ignore some character at a specific position.....

signaldescription:
# Shine-Delgarno
T 7
T 8
G 6
A 5
C ...

okay I have fix it thanks!

Thanks for looking throught it; unfortunately my professor is not always available and it would take some time before I could go on with this without any advice(because I'm stuck). As I'm doing this...

Yes its one of my project that I am working on at my uni, and i will appreciate if someone can help me out by giving me some comments and ideas on how to work it out, because Iam pretty lost...
...

Hi there...

I am working one a perl script program and hope someone can help me , I'll give you a quick description of my project:

My program is given a fasta file, a signal description and a...

Thanx alot for ur help :)

Hi,
I am working on a perl script, were a program is given a file, another file and a deviation (a number) as input on the command line. I also wants the program to complain when its too many...

Hey Kevin and kath...
Thanx ALOT for ur reply, its really cool to count with daniweb guys :lol:
I had combined my solution through ur answers:

use strict;
open(IN, '<', 'clean5.acc') or die...

Hi...
I am trying to make a program that ask for a specific DNA number, where the program have to check if the given number is in a specific given list... here the program should tell me if they...

Hmmm I had tried that, and its still wouldnt work when I nedit revdna.dat, only the sequence is showing!!!!!
the first line apperently cant be seen in the texteditor .....!

Hi guys ....

Thanxs alot for ur big help!
Kevin I have tried the following but when I want to write the data into a file I get problems with displaying the first line without repeating itself for...

Hi :-|

I am workning on a projekt based on DNA sequences in Perl. I wanna make a program that reverse complements the DNA sequence and writes it into a file fx. revdna.fsa (Which I have done ) but...

Hi :cheesy:

Thanx alot steven for your quick respons its really a big help.. this should solved my problem hopefully...

Have a nice time...
Soad

;) Hi guys....

I am a beginner at Perl, and i have some problemes I wanna solve!! I hope u can help me.

the exercise is:


Make a program that counts the number of positive and negative...