If the whole point of this venture is to migrate to XP, you should just purchase a load of XP and start fresh. (especially since you sound pretty sure that the Win 98 disk is probably damaged).
The fact that you get no graphical desktop after the b0rked 98 install attempt means that you probably shouldn't bother with trying to work things out from the command line (the "C:\" prompt); the installation was obviously not successful.
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Wombat At Large
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since Dec 2003