What you describe won't work anyway, so don't bother. If you have Windows 98, the system will not boot from the SCSI drive. If you have Windows 2000 or Windows XP, the boot files will need to remain on the current C:\ drive for the system to boot successfully.
I'm assuming, of course, that you've added a SCSI drive to the system. You're a bit unclear on that, so please explain if that's not the case. If it's running from an add-in card, it's unlikely that your motherboard BIOS will allow it to be the boot device.
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Grandad
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since Mar 2004