The utility program you'll find at the link provided is called MaxBlast3, which is a more recent version of the form of software solution you refer to, which I've not heard such problems reported in relation to.
I'm unsure about your hardware solution. If you disable the onboard IDE channels in BIOS setup does the drive then show up? Windows 98 is certainly intended to reside on drive C:
Have you a model number there for your add-in controller?
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Grandad
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since Mar 2004