Is there any way to make VS2005 use the Aztec C compiler commands (from Aztec BIN folder)?
No, but if the code does not rely on extensions to the language/library by Aztec C, you can probably port the code to VS2005 without much trouble. I am not sure if the code you want to debug is pre-standard or not, but VC does allow K&R style code still, so that should not be a huge problem.
If not VS2005, is there some way I can debug the program?
Most debuggers will not care what compiler compiled the executable, but you will not get pretty source level information. That will make debugging harder.
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