Is this only happening in the program when you are trying to view a graphic? If so, it may be that your settings have somehow been switched in both/either program(s). There is an option to change the display performance so that you can work faster. It will draw a box where your graphic normally is so you can look at basic layout of elements without taking up system resources to draw the graphic it's self.
In InDesign, go to View > Display Performance and make sure it is on "typical display"
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