The important thing is how (and even more importantly when) you decrypt your page. If your page content is decrypted using javascript or other client-side means; then, because most search engines don't process client side scripts; your page wil not be indexed with relevant content.
If you decrypt during a server side operation, or use an encrypted transfer protocol (like SSL); and basically providing your page ends up as decrypted source being delivered as a result of a request; then search spiders won't know the difference.
If you're encrypting page content for any reason other than 'hiding the source code', then why do you want the pages to be indexed in search engines?
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