parijat24

hi, The problem is that i have one list like [l1 l2 l3 l4 l5 l6 l7 l8 ] no i want to compare l1 with l2 and get some score then l1 with l3.... and then l1 with l3 , l4 , l5.......... so on when i am compareing …

[CODE]hi , once gain i need a suggestion from the expert, the prob is that i have 400 folder(folderxyz) in a given directory, and each folder contains some file . now i want to open directory , open each folder one by one and read the files present in it …

hi, my problem is that i have written script which read a file , take line by line split it and then store it into dictionary. and i am writing the values of dictionary on other file, the problem is that at the end of file , it doesnt print …

[CODE]hi there is an interesting problem , as i have almost 500 file in directory ~/work/whole_proteome/analysis_xenopus_takifugu_tetradon/split_result/filtered_domain/big_cluster_fasta_format/, now i want to run a perl script which is present in ~/work/whole_proteome/analysis_xenopus_takifugu_tetradon/split_result/filtered_domain/ORTHOMCLV1.4/ the problem is using os.system(command as it does not take the command properly) [/CODE] [CODE]from sys import * import os import …

Hi , I have interesting problem as I have a file 'A' which looks like [CODE]>BIG_CLUSTER96 ENSTNIP00000002777 TETRAODON8 1 [COLOR="Green"]105[/COLOR] 136 [B]Ank[/B] [COLOR="red"]NGCTPLHYAASKDRYEIALMLLENGADPNATD[/COLOR] >BIG_CLUSTER96 ENSTNIP00000002777 TETRAODON8 1 [COLOR="Green"]141[/COLOR] 169 [B]Ank [/B] [COLOR="red"]TPLHRASAKGNYRLIQLLLRQSASTNIQD[/COLOR] >BIG_CLUSTER96 ENSTNIP00000002777 TETRAODON8 1 [COLOR="Green"]172 [/COLOR] 202 [B]Ank [/B] [COLOR="Red"]GNTPLHLACDEERVEAAKLLVEHGASIYIEN[/COLOR] >BIG_CLUSTER96 ENSTNIP00000002777 TETRAODON8 1 [COLOR="Green"] 40 [/COLOR] 71 …

[CODE]I have afile which has entries like BIG_CLUSTER106: cluster1150: CUB CUB CUB BIG_CLUSTER106: cluster1627: CUB Zona_pellucida BIG_CLUSTER106: cluster1632: CUB CUB CUB CUB CUB BIG_CLUSTER106: cluster1814: Kringle WSC CUB BIG_CLUSTER106: cluster2768: CUB CUB F5_F8_type_C F5_F8_type_C MAM DUF3481 BIG_CLUSTER106: cluster661: Astacin CUB CUB CUB CUB BIG_CLUSTER106: cluster687: CUB PDGF BIG_CLUSTER106: cluster701: CUB …

[CODE]hi I am generating program to find keys in adictionary having same value in abig dictionary please see the example [B]cluster1 [/B]ENSTRUP00000000001 ENSTRUP00000000001 ENSTRUP00000001433 ENSTRUP00000030987 ENSTRUP00000031348 ENSTRUP00000033778 ENSTRUP00000034939 ENSTRUP00000036445 ENSTRUP00000041507 [B]cluster2[/B] ENSTRUP00000000004 ENSTRUP00000000004 ENSTRUP00000000270 ENSTRUP00000004241 ENSTRUP00000010453 ENSTRUP00000012064 ENSTRUP00000015898 ENSTRUP00000019830 ENSTRUP00000024116 ENSTRUP00000026101 ENSTRUP00000027201 ENSTRUP00000028303 ENSTRUP00000028313 ENSTRUP00000029002 ENSTRUP00000031498 ENSTRUP00000032796 ENSTRUP00000032823 ENSTRUP00000033498 ENSTRUP00000036274 …

[CODE]dict = {'ENSTRUT00000047813': '1680', 'ENSTRUT00000047812': '2067', 'ENSTRUT00000047811': '2067', 'ENSTRUT00000047810': '2088', 'ENSTRUT00000047814': '738', 'ENSTRUT00000047808': '2208', 'ENSTRUT00000047809': '2001'}[/CODE] I want to find out the key with max value from the dict I am using the [CODE] protein = max(dict.iteritems(),key=operator.itemgetter(1))[0][/CODE] but it will give me results as [CODE]'ENSTRUT00000047814'[/CODE] though i know that it …

[CODE]ENSTRUG00000000009 ENSTRUT00000000011 1026 509 5896 ENSTRUG00000000011 ENSTRUT00000000014 420 63 482 ENSTRUG00000000012 ENSTRUT00000000015 10902 15313 93157 ENSTRUG00000000012 ENSTRUT00000000016 2844 23243 60985 [/CODE] as this is my input file it has five coloumns and there is for each line , we have to identify unique entry from the first coloumns which high …

[QUOTE]The actual file is as follows [/QUOTE] [CODE]>sp|P81928|140U_DROME 67 198 Tim17 8.9e-19 No_clan >sp|P20905|5HT1R_DROME 179 507 7tm_1 1.1e-97 CL0192 >sp|P28285|5HT2A_DROME 243 805 7tm_1 3.2e-73 CL0192 >sp|P28286|5HT2B_DROME 107 588 7tm_1 7.2e-82 CL0192 >sp|P13368|7LESS_DROME 439 520 fn3 1.4e-10 CL0159 1313 1380 fn3 3.4e-05 CL0159 1800 1890 fn3 3.6e-12 CL0159 2209 2481 Pkinase_Tyr …

hi, I am again involve in solving one trivial problem , that is I have a text file in which large number of entry are there like proteinid[COLOR="red"][/COLOR] sp|P13368|7LESS_DROME fn3 fn3 fn3 Pkinase_Tyr sp|P14599|A4_DROME A4_EXTRA APP_amyloid sp|P09478|ACH1_DROME Neur_chan_LBD Neur_chan_memb sp|P17644|ACH2_DROME Neur_chan_LBD Neur_chan_memb sp|P04755|ACH3_DROME Neur_chan_LBD Neur_chan_memb sp|P25162|ACH4_DROME Neur_chan_LBD Neur_chan_memb sp|P16395|ACM1_DROME 7tm_1 …

I have this sequence in the text file >sp|P20905|5HT1R_DROME 5-hydroxytryptamine receptor 1 OS=Drosophila melanogaster GN=5-HT7 PE=2 SV=1 MALSGQDWRRHQSHRQHRNHRTQGNHQKLISTATLTLFVLFLSSWIAYAAGKATVPAPLV EGETESATSQDFNSSSAFLGAIASASSTGSGSGSGSGSGSGSGSGSYGLASMNSSPIAIV SYQGITSSNLGDSNTTLVPLSDTPLLLEEFAAGEFVLPPLTSIFVSIVLLIVILGTVVGN VLVCIAVCMVRKLRRPCNYLLVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVS FDVLCCTASILNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLI LGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAARRIVLEEKRAQ THLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTCGGLSSGGGALAG HGSGGGVSGSTGLLGSPHHKKLRFQLAKEKKASTTLGIIMSAFTVCWLPFFILALIRPFE TMHVPASLSSLFLWLGYANSLLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQD QYGEPPSQRVMLGDERHGARESFLD I want to split this into list as [[COLOR="Red"]'[/COLOR]>sp|P20905|5HT1R_DROME 5-hydroxytryptamine receptor 1 OS=Drosophila melanogaster GN=5-HT7 PE=2 SV=1][COLOR="Red"]'[/COLOR],[COLOR="Red"]'[/COLOR]MALSGQDWRRHQSHRQHRNHRTQGNHQKLISTATLTLFVLFLSSWIAYAAGKATVPAPLV EGETESATSQDFNSSSAFLGAIASASSTGSGSGSGSGSGSGSGSGSYGLASMNSSPIAIV SYQGITSSNLGDSNTTLVPLSDTPLLLEEFAAGEFVLPPLTSIFVSIVLLIVILGTVVGN VLVCIAVCMVRKLRRPCNYLLVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVS FDVLCCTASILNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLI LGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAARRIVLEEKRAQ THLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTCGGLSSGGGALAG …

hey, thanks to all of them who helps me in learning this language, again there is one text file file 1.txt >[B]sp|P81928[/B][/B]|140U_DROME 67 198 Tim17 8.9e-19 No_clan >[B][/B]sp|P20905|5HT1R_DROME 179 507 7tm_1 1.1e-97 CL0192 >sp|P28285|5HT2A_DROME 243 805 7tm_1 3.2e-73 CL0192 >sp[B][/B]|P28286|5HT2B_DROME 107 588 7tm_1 7.2e-82 CL0192 * here the number represents …

hi , my problem isthat i have two file s with this format file 1 has two coloumns protein id geneid qqqq yyyy tttt pppp oooo llll now i have one other file as cluster file as cluster 1 : yyyy,pppp cluster 2 : llll, yyyy, . . . . …

hi , my problem isthat i have two file s with this format file 1 has two coloumns protein id geneid qqqq yyyy tttt pppp oooo llll now i have one other file as cluster file as cluster 1 : yyyy,pppp cluster 2 : llll, yyyy, . . . . …

Hi , Actually I have just to copy some specific files from a directory. As there are 5000 files and I have to copy only 300. so I just want to make program which read the name of the file given in text file and then copies those file from …