[bioinformatics] Forum Topics

Thank you for looking at my question. I am trying to solve this homework question. Consider the problem of sequencing genome by random reads. If G is the length of the entire sequence, L is the length of the read and n is the number of reads, then coverage is …

Hi everyone, Coul you please help me to find the position between Star_poso and end_posi. I have two data Data 1: Num Posi 1 2 2 5 3 9 4 16 5 19 .. .. Data 2: Num Star_posi End_posi 1 1 10 2 15 18 3 26 30 .. …

I posted a similar thread back in Nov and got some great help. I'm modifying the code to be useful to not only compare multiple columns from two separate files, but also to classify each line from @hairpin to determine if the parameters fall within any of the ESThits, outside …

This is very much a bioinformatics problem, so any bioinformaticians familiar with the eUtilities of the NCBI, your help would be much appreciated. I have the following code to get links from a Pubmed search: [CODE]use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'elink', -email => 'mymail@foo.bar', -dbfrom => 'pubmed', -cmd …

How do you write a Python program that takes DNA sequence and give number of ORFs found in the sequence?

Hi guys, How do i extract a sequences from a fasta file by taking the start and end position from a gene predicted file: here the example the file with the orf statistics is my predicted file and for example the start position for the first orf is 65 and …