Anna123

Dear All, I want to know whether there is any perl script availabe to compare more than two files and print out the matching rows, for example if i have following files, file_1 TPT 0.0520852296 RP11 0.1062639955 AC01 1.4112745088 AC00 0.4992644913 file_2 LINC 0.1648703511 AC00 0.1632039268 CTD 4.3654577641 RP1 0.1357422856 …

Dear All, I have two files where I need to map file_1 to file_2 based on the similarity of the 1st column from file_1 to 8th column to file_2 and print the similar rows with annotaions for that. I am able to achieve that with the following perl script. But …

Dear All, Can aynyone help me with a script which could scan the regions of one file to the regions with second file, for example file 1 looks like this, chr5 88013976 88018740 file 2 : chr5 88013975 88018742 ENST00000340208.5 chr5 88024310 88024445 ENST00000340208.5 chr5 88025035 88025164 ENST00000340208.5 I want …

Dear All , I have a single file, which I need to rearange, The file format is, A1 ID* 3/2 A2 ID 3/3 A3 RM* 2/6 A1 RM 4/4 A2 D* 1/2 A5 D 5/3 A7 T 5/13 I need the output as this ID ID* RM RM* D D* …

Dear All, It would be great if someone would help me in rearranging the following file absed on the similarity between the column, My file looks like this, CD79B-GH1 ID* 3/2 CD79B-GH1 ID 3/3 CIRBP-C19orf24 RM 2/6 CIRBP-C19orf24 RM* 4/4 DCAKD-NCL RL 1/2 HMGB2-EHMT2 RL* 5/3 KANSL1-ARL17A IM 5/13 KANSL1-ARL17B …

Dear All, I have two files file1 looks like this,the test file ENSG00000000003.10 0 ENSG00000000005.5 0 ENSG00000000419.8 392 ENSG00000000457.8 24 and the GTF file like this, chr1 HAVANA 11869 14412 . + . + . gene_id ENSG00000223972.4 transcript_id ENSG00000223972.4 gene_type pseudogene gene_status KNOWN gene_name DDX11L1 transcript_type pseudogene transcript_status KNOWN chr1 …

Dear All, I have two files first file looks like this, ENSG00000000003.10 0 and the second one like this, ENSG00000000460.12 24chr1 HAVANA 11869 14412 . + . + . gene_id "ENSG00000223972.4"; transcript_id "ENSG00000223972.4"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type "pseudogene"; transcript_status "KNOWN"; As you see I nee dto comapre …