Im just trying to figure out why I have a array out of bounds that all can somebody help?

public class Life2 {

public static void main(String[] args) throws Exception{
boolean dead;
int winsX = 0;
int num = 1;

int count = 0;
int countL;
int countD;
char [][] array1 = {
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '}
				};
				
char [][] array2 = {
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '},
					{' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' ', ' '}
					
				};
	/* Fill array with 0's for dead cells */
		for(int i = 0; i < array1.length; i++){
			for(int j = 0; j < array1.length; j++){
				array1[i][j] = ' ';
			}
		}
		/*Fills in array 2 with 0's */
		for(int a = 0; a < array1.length; a++){
			for(int b = 0; b < array1.length; b++){
				array1[a][b] = ' ';
			}
		}


      String Num = javax.swing.JOptionPane.showInputDialog("How many cells are alive");
		int pow = Integer.parseInt(Num);
		for(int y = 0; y < pow; y++){
			String RowX = javax.swing.JOptionPane.showInputDialog("Enter cell row " + (y+1) + ":");
         int rowX = Integer.parseInt(RowX);
			String ColumnX = javax.swing.JOptionPane.showInputDialog("Enter cell column" + (y+1) + ":");
			int columnX = Integer.parseInt(ColumnX);
	
				array1[(rowX)][(columnX)] = 'X';
			

	for(int x = 0; x < array1.length; x++){
				for(int z = 0; z < array1.length; z++){
					System.out.print(array1[x][z]);
					if(z < 11)
						System.out.print("|");
					}
					System.out.println();
					if(x < 11)
						System.out.println("___________________");
			}
			//break;
	                }
      // array[0][0] = ' '; array[0][1] = ' '; array[0][2] = ' '; array[0][3] = ' '; array[0][4] = ' '; array[0][5] = ' '; array[0][6] = ' '; array[0][7] = ' '; array[0][8] = ' '; array[0][9] = ' ';
// 		array[1][0] = ' '; array[1][1] = ' '; array[1][2] = ' '; array[1][3] = ' '; array[1][4] = ' '; array[1][5] = ' '; array[1][6] = ' '; array[1][7] = ' '; array[1][8] = ' '; array[1][9] = ' ';
// 		array[2][0] = ' '; array[2][1] = ' '; array[2][2] = ' '; array[2][3] = ' '; array[2][4] = ' '; array[2][5] = ' '; array[2][6] = ' '; array[2][7] = ' '; array[2][8] = ' '; array[2][9] = ' ';
// 		array[3][0] = ' '; array[3][1] = ' '; array[3][2] = ' '; array[3][3] = ' '; array[3][4] = ' '; array[3][5] = ' '; array[3][6] = ' '; array[3][7] = ' '; array[3][8] = ' '; array[3][9] = ' ';
// 		array[4][0] = ' '; array[4][1] = ' '; array[4][2] = ' '; array[4][3] = ' '; array[4][4] = ' '; array[4][5] = ' '; array[4][6] = ' '; array[4][7] = ' '; array[4][8] = ' '; array[4][9] = ' ';
// 		array[5][0] = ' '; array[5][1] = ' '; array[5][2] = ' '; array[5][3] = ' '; array[5][4] = ' '; array[5][5] = ' '; array[5][6] = ' '; array[5][7] = ' '; array[5][8] = ' '; array[5][9] = ' ';
// 		array[6][0] = ' '; array[6][1] = ' '; array[6][2] = ' '; array[6][3] = ' '; array[6][4] = ' '; array[6][5] = ' '; array[6][6] = ' '; array[6][7] = ' '; array[6][8] = ' '; array[6][9] = ' ';
// 		array[7][0] = ' '; array[7][1] = ' '; array[7][2] = ' '; array[7][3] = ' '; array[7][4] = ' '; array[7][5] = ' '; array[7][6] = ' '; array[7][7] = ' '; array[7][8] = ' '; array[7][9] = ' ';
// 		array[8][0] = ' '; array[8][1] = ' '; array[8][2] = ' '; array[8][3] = ' '; array[8][4] = ' '; array[8][5] = ' '; array[8][6] = ' '; array[8][7] = ' '; array[8][8] = ' '; array[8][9] = ' ';
// 		array[9][0] = ' '; array[9][1] = ' '; array[9][2] = ' '; array[9][3] = ' '; array[9][4] = ' '; array[9][5] = ' '; array[9][6] = ' '; array[9][7] = ' '; array[9][8] = ' '; array[9][9] = ' ';
	

    	// String Choice = javax.swing.JOptionPane.showInputDialog("Would you like to continue the next gen?");
// 		num = Integer.parseInt(Choice);
   num = 1;
		do{
		int neighbors;
     for (int i = 0; i < 11; i++)
     {
         for (int j = 0; j < 11; j++)
         {
             neighbors = 0;
             //Begin counting number of neighbors:
             if (array1[i-1][j-1] == 'X') neighbors += 1;
             if (array1[i-1][j] == 'X') neighbors += 1;
             if (array1[i-1][j+1] == 'X') neighbors += 1;
             if (array1[i][j-1] == 'X') neighbors += 1;
             if (array1[i][j+1] == 'X') neighbors += 1;
             if (array1[i+1][j-1] == 'X') neighbors += 1;
             if (array1[i+1][j] == 'X') neighbors += 1;
             if (array1[i+1][j+1] == 'X') neighbors += 1;
             
             //Apply rules to the cell:
             if (array1[i][j] == 'X' && neighbors < 2)
                array1[i][j] = ' ';
             else if (array1[i][j] == 'X' && neighbors > 3)
                array1[i][j] = ' ';
             else if (array1[i][j] == 'X' && (neighbors == 2 || neighbors == 3))
                array1[i][j] = 'X';
             else if (array1[i][j] == ' ' && neighbors == 3)
                array1[i][j] = 'X';
         }
     }
for(int i = 1; i < 1; i++){
			for(int j = 1; j < 11; j++){
				array1[i][j] = array2[i][j];
			}
		}
		
		for(int i = 1; i < 1; i++){
			for(int j = 1; j < 1; j++){
					array2[i][j] = ' ';
			}
		}
/* Print new Generation */
for(int x = 0; x < 11; x++){
				for(int z = 0; z < 11; z++){
					System.out.print(array2[x][z]);
					if(z < 11)
						System.out.print("|");
					}
					System.out.println();
					if(x < 11)
						System.out.println("___________________");
			}

    String Diablo = javax.swing.JOptionPane.showInputDialog("If you want to continue Press 1 if not press 0");
	 int diablo = Integer.parseInt(Diablo);
		

		
		
	   }while(num == 1);
		 }
		
}

A few questions...

First, why do you declare two arrays and define them full of spaces then iterate them through loops to assign space characters to them when they already have that value?

You can reduce code-bloat by simply instantiating your arrays to have 12x12 characters.

Furthermore the initial value of a character should be the space character, so there's no need to allocate a static built-in type to each indice of the double array.

An example--

public class InitializeArrayTest{

	public static void main(String... args){
		char[][] dCharArray = new char[12][]; // creating a double array with 12 array of unknown length

		for(int i = 0; i < 12; i++){
		   dCharArray[i] = new char[12]; // allocating arrays of length 12 to the arrays of the double array
		}

		for(int i = 0; i < dCharArray.length; i++){ // the length (or amount) of arrays stored in dCharArray
			for(int j = 0; j < dCharArray[i].length; j++){ // length of the array at location dCharArray[i]
				System.out.print(""+dCharArray[i][j] + ','); // prints the value to the screen as a character
			}
			System.out.println(); // enters a new line
		}
	}
}

--also I can see a potential problem in this chunk of code--

//...
             if (array1[i-1][j-1] == 'X') neighbors += 1; // what happens when i and j are 0? -1,-1 is out of bounds!
             if (array1[i-1][j] == 'X') neighbors += 1; // i = 0, -1, 0, out of bounds!
             if (array1[i-1][j+1] == 'X') neighbors += 1; // i = 0 or j = 11, out of bounds!
             if (array1[i][j-1] == 'X') neighbors += 1; // etc
             if (array1[i][j+1] == 'X') neighbors += 1; // etc
             if (array1[i+1][j-1] == 'X') neighbors += 1; // etc
             if (array1[i+1][j] == 'X') neighbors += 1; // etc
             if (array1[i+1][j+1] == 'X') neighbors += 1; // etc..
//...

--This reminds me of the Doodlebugs project our teacher made us do. We needed a way for bugs to move in random locations (to the left, right north or south) and had to be able to determine if the move was within the bounds of the board. Same deal with the checkers program we had to create.

You may want to check for neighbors of a particular element, you may want to instead use objects as X's instead of char values. Then you can increment the amount of neighbors that particular object has and iterate through the list of objects and display the amount of neighbors they have.

Also, can you elaborate what it is you are trying to do with this program/game? i'm fairly interested to know =)

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