I am working on the following XML code
<GBSeq_source-db>UniProtKB: locus NR1I3_HUMAN, accession Q14994; class: standard. extra accessions:Q5VTW5,Q5VTW6 created: Jul 15, 1999. sequence updated: Jun 21, 2004. annotation updated: Feb 8, 2011. xrefs: Z30425.1, CAA83016.1, AL590714.27, CAH72153.1, CAH72154.1, CH471121.2, EAW52608.1, EAW52609.1, BC069626.1, AAH69626.1, A56197, NP_001070948.1, NP_005113.1, 1XV9_B, 1XV9_D, 1XVP_B, 1XVP_D xrefs (non-sequence databases): IPI:IPI00001687, IPI:IPI00418379, UniGene:Hs.349642, PDBsum:1XV9, PDBsum:1XVP, ProteinModelPortal:Q14994, SMR:Q14994, IntAct:Q14994, STRING:Q14994, PhosphoSite:Q14994, Ensembl:ENST00000367979, Ensembl:ENSP00000356958, Ensembl:ENSG00000143257, Ensembl:ENST00000367983, Ensembl:ENSP00000356962, GeneID:9970, KEGG:hsa:9970, UCSC:uc001fzx.1, CTD:9970, GeneCards:GC01M161199, HGNC:7969, MIM:603881, neXtProt:NX_Q14994, GeneTree:ENSGT00570000079102, GeneTree:EPGT00050000002812, HOVERGEN:HBG108655, Reactome:REACT_71, NextBio:37626, ArrayExpress:Q14994, Bgee:Q14994, CleanEx:HS_NR1I3, Genevestigator:Q14994, GermOnline:ENSG00000143257, GO:0005654, GO:0004882, GO:0005515, GO:0043565, GO:0003700, GO:0004887, GO:0003713, GO:0008270, GO:0034339, InterPro:IPR008946, InterPro:IPR000536, InterPro:IPR001723, InterPro:IPR001728, InterPro:IPR001628, InterPro:IPR013088, Gene3D:G3DSA:1.10.565.10, Gene3D:G3DSA:126.96.36.199, Pfam:PF00104, Pfam:PF00105, PRINTS:PR00398, PRINTS:PR00047, PRINTS:PR00546, SMART:SM00430, SMART:SM00399, SUPFAM:SSF48508, PROSITE:PS00031, PROSITE:PS51030</GBSeq_source-db>
I want to extract different parts from it and display them as separate elements..
<field name="InterPro"> IPR008946 IPR000536 IPR001723 IPR001728 IPR001628 IPR013088 </field> <pfam> PF00104 PF00105 </pfam>
and many of the others...
i did following at leat
<field name="pfam"><xsl:for-each select="tokenize(substring-after(GBSeq_source-db,'Pfam'),',')"> <xsl:for-each select="tokenize(.,':')"> <xsl:if test="position() > 1"> <xsl:value-of select="starts-with(.,'PF')"/> <xsl:text> </xsl:text> </xsl:if> </xsl:for-each> </xsl:for-each> </field>
i know,i did it in a wrong way, as it gives me the output for the presence/absence of those terms...but that is wat came to my mind..i m all new..if any one of you please provide me with a clue, I can work for many other things tat are similar to this..
any help is greatly appreciated..