I am a student, doing a project on superposition(bioinformatics).
I am doing the part on rotation using matrices and I'm stuck.
I need to open a visualizer (jmol) and adjust the angles of my protein structure at the same time via java codes.

So I need to have 2 protein structures on top of one another and rotate it so that matches in a visuaizer. How do I get about doing that?

thanks for information.

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