Maybe something like this:
option_input = raw_input(">>> ").upper()
if option_input == "V":
print "High Scores:\n"
saveFile = open("scores.txt", "r")
scores = saveFile.readlines()
for line in scores:
if "," in line:
userScore, userName = line.split(',')
print "%2s, %s" % (userScore, userName.strip())
At the end of the program you're assigning the variables wrong and end up creating tuples. You need to have your print statement in the loop to cycle through the lines.