Hi and I have been searching for a ssh program with a graphical interface purely to upload and download files from the root of the server without ftp. Does anybody suggest any programs for this job?
Windows XP Pro is my Operating System and Ubuntu versions are also welcome.

SFTP is a ssh based ftplike protocol. It communicates completely through ssh port. You can start it from linuxshell by sftp <serverIP>.
WinSCP is an sftp client for Windows.
http://winscp.net/eng/index.php

commented: Life saver having replies with great information +4

Thanks for the suggestion as now I can upload+download the root of my server.
*Solved*